Book chapter on how to smFISH in zebrafish embryos

Interested in detecting single transcripts from zebrafish embryos? or applying smFISH to your research?

Carine’s chapter in Methods in Molecular Biology is out!

The chapter provides a detailed protocol: from setting up the embryos to cryosection, to smFISH, to image analysis.

You’ll also find a description of the pipeline for membrane segmentation and transcription detection.

Visit Book Chapter at Methods in Molecular Biology

Máté: Submit thesis ✓

Máté reached an important milestone of his PhD studies – thesis submission! High-Five Máté for crunching your way through thesis writing and making it through!

Next up: thesis defense.

PhD defense: Dr. Shai Joseph

 

 

2017.10.30: Congratulations Shai on successfully defending his PhD!

Many thanks to our artistically talented Sabrina for making Shai’s fantastic Doktorhut,

which features past and current lab members partying at “Shai’s Histone Cocktail Bar” atop the hat.

All the best to Shai in his new career path!

 

 

Photo credit (top featured image): IMPRS PhD program

Lennart presents at CBG’s Friday Seminar

20.10.2017: With ~3 years of research experience at CBG up his sleeve, it was now Lennart’s time to take centre stage and present his research to the CBG community at the internal Friday Seminar series. The showcase was followed by social hour with fellow scientists. We capped our Friday off with a belated birthday celebration over delicious burgers.

 

Lab Retreat 2017

Tis that time of the year again! This year’s Vastenhouw Lab retreat took place in Technische Universität (TU) Dresden’s Computer Science green building. Together with Vasily Zaburdaev (MPI-PKS) and Thomas Quail (Jan Brugues lab, MPI-CBG), we had a matinee of stimulating and fruitful discussions.

In the evening, we all gathered around a kitchen and bar – where we got to cook our dinner and shake our cocktails (with some help from the professionals). A festive night for the Vastenhouw Lab! There were also hellos and goodbyes. We welcomed new lab members and said farewell to the veterans, as they transition to the next chapter of their career.

        

 

Celebrate! Carine’s paper is out & Happy birthday Máté

Cake and champagne to celebrate Máté’s birthday and Carine’s latest achievement: her research on how transcriptional noise is resolved in the embryo is out! Shout out to Christoph Zechner (Center for Systems Biology Dresden), who collaborated with Carine on this story.

Check out the paper in Genes & Development’s August 15th issue: http://genesdev.cshlp.org/content/early/2017/09/13/gad.302935.117

which will feature the cover illustration (below right) from Julia Eichhorn (Media Technologies & Outreach, MPI-CBG).

Science cruise along the Elbe River

2017.08.17 – Pavel and Edlyn took part in DRESDEN-concept’s Wissenschaftsfahrt (Science Cruise). They joined other fellow researchers (from MPI-CBG and around Dresden) to celebrate Dresden as an outstanding city for science and culture.

DRESDEN-concept (Dresden Research and Education Synergies for the Development of Excellence and Novelty) is a research alliance that aims to “realize synergies in research, teaching, infrastructure and administration”. MPI-CBG is among the many partners of this network. For more information, visit: www.dresden-concept.de/en/home.html

The evening was filled with mingling with scientists, a speech from Dr. Eva-Maria Stange (the Saxon State Minister of Science and Fine Arts), enjoying music from a live band, and taking in the beautiful landscapes along the Elbe River.

 

 

 

 

 

Máté at the Zebrafish Meeting in Hungary

July 3rd – 7th, 2017: Máté attended the 10th European Zebrafish Meeting in his hometown, Budapest, and gave a talk in the Genomics/Epigenetics session. The conference brought together the ever-growing zebrafish community (over 500 participants) and covered a wide range of topics. Those who missed it will have to wait until 2020, when the next EZM takes place in Prague.

 

 

Science outreach – for juniors and seniors

Last month Pavel, Lennart, and Máté shared their enthusiasm for science as part of the “Junior Doktor” and “Seniorenakademie” series at our institute.

Pavel taught highly motivated pupils from primary school about the evolution of the eye. This was followed up by a microscopy session where the ‘scientists of the future’ got to look at zebrafish pineal glands and stained nuclei of zebrafish embryos.

Máté gave a seminar about transcription factors to an excited elder audience. He talked about general concepts of how transcription factors can orchestrate gene expression programs with some examples from his own research in zebrafish.