Publications

2017

Stapel, L Carine; Zechner, Christoph; Vastenhouw, Nadine L
Uniform gene expression in embryos is achieved by temporal averaging of transcription noise
Genes Dev 2017 Sep 13 {Epub ahead of print]
 
Boothe, Tobias; Hilbert, Lennart; Heide, Michael; Berninger, Lea; Hüttner, Wieland B ; Zaburdaev, Vasily; Vastenhouw, Nadine; Myers, Eugene W; Drechsel, David N; Rink, Jochen C
A tunable refractive index matching medium for live imaging cells, tissues and model organisms
eLife, 27240 2017
 
Joseph, Shai R; Pálfy, Máté; Hilbert, Lennart; Kumar, Mukesh; Karschau, Jens; Zaburdaev, Vasily; Shevchenko, Andrej; Vastenhouw, Nadine L
Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos
eLife, 23326 (2017)
 
Palfy, Máté; Joseph, Shai R; Vastenhouw, Nadine L
The timing of zygotic genome activation
Current Opinion in Genetics and Development, 43, pp. 53-60 (2017)

2016

Stapel, L Carine; Lombardot, Benoit; Broaddus, Coleman; Kainmueller, Dagmar; Jug, Florian; Myers, Eugene W.; Vastenhouw, Nadine L.
Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos
Development, 143, no. 3, pp. 540-546 (2016)

2014

Stapel, L Carine; Vastenhouw, Nadine
Message control in developmental transitions; deciphering chromatin's role using zebrafish genomics.
Brief Funct Genomics, 13, no. 2, pp. 106-120 (2014)
Pubmed Entry

Zhang, Yang; Vastenhouw, Nadine; Feng, Jianxing; Fu, Kai; Wang, Chenfei; Ge, Ying; Hummelen, Paul van; Schier, Alexander F; Liu, Xiaole Shirley
Canonical nucleosome organization at promoters forms during genome activation.
Genome Res, 24, no. 2, pp. 260-266 (2014)
Pubmed Entry, Download PDF

2012

Vastenhouw, Nadine; Schier, Alexander F
Bivalent histone modifications in early embryogenesis.
Curr Opin Cell Biol, 24, no. 3, pp. 374-386 (2012)
Pubmed Entry, Download PDF

Pauli, Andrea; Valen, Eivind; Lin, Michael F; Garber, Manuel; Vastenhouw, Nadine; Levin, Joshua Z; Fan, Lin; Sandelin, Albin; Rinn, John L; Regev, Aviv; Schier, Alexander F
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Res, 22, no. 3, pp. 577-591 (2012)
Pubmed Entry

2010

Vastenhouw, Nadine; Zhang, Yang; Woods, Ian G; Imam, Farhad; Regev, Aviv; Liu, X Shirley; Rinn, John L; Schier, Alexander F
Chromatin signature of embryonic pluripotency is established during genome activation.
Nature, 464, no. 7290, pp. 922-926 (2010)
Pubmed Entry

2006

Vastenhouw, Nadine; Brunschwig, Karin; Okihara, Kristy L; Müller, Fritz; Tijsterman, Marcel; Plasterk, Ronald H A
Gene expression: long-term gene silencing by RNAi.
Nature, 442, no. 7105, pp. 882-882 (2006)
Pubmed Entry

2004

Haaften, Gijs van; Vastenhouw, Nadine; Nollen, Ellen A A; Plasterk, Ronald H A; Tijsterman, Marcel
Gene interactions in the DNA damage-response pathway identified by genome-wide RNA-interference analysis of synthetic lethality.
Proc Natl Acad Sci U.S.A., 101, no. 35, pp. 12992-12996 (2004)
Pubmed Entry

Vastenhouw, Nadine; Plasterk, Ronald H A
RNAi protects the Caenorhabditis elegans germline against transposition.
Trends Genet., 20, no. 7, pp. 314-319 (2004)
Pubmed Entry

Robert, V J P; Vastenhouw, Nadine; Plasterk, Ronald H A
RNA interference, transposon silencing, and cosuppression in the Caenorhabditis elegans germ line: similarities and differences.
Cold Spring Harb Symp Quant Biol, 69, pp. 397-402 (2004)
Pubmed Entry

2003

Vastenhouw, Nadine; Fischer, Steffi; Robert, V J P; Thijssen, Karen L; Fraser, Andrew G; Kamath, Ravi S; Ahringer, Julie; Plasterk, Ronald H A
A genome-wide screen identifies 27 genes involved in transposon silencing in C. elegans.
Curr Biol, 13, no. 15, pp. 1311-1316 (2003)
Pubmed Entry

2001

Masselink, H; Vastenhouw, Nadine; Bernards, René
B-myb rescues ras-induced premature senescence, which requires its transactivation domain.
Cancer Lett, 171, no. 1, pp. 87-101 (2001)
Pubmed Entry

Berkhout, B; Vastenhouw, Nadine; Klasens, B I; Huthoff, H
Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription.
RNA, 7, no. 8, pp. 1097-1114 (2001)
Pubmed Entry